SrasV1, Main, Exploration, bibRecord, 000B71

Characterization of a New Member of Alphacoronavirus with Unique Genomic Features in Rhinolophus Bats

Identifieur interne : 000B71 ( Main/Exploration ); précédent : 000B70; suivant : 000B72

Characterization of a New Member of Alphacoronavirus with Unique Genomic Features in Rhinolophus Bats

Auteurs : Ning Wang [République populaire de Chine] ; Chuming Luo [République populaire de Chine] ; Haizhou Liu ; Xinglou Yang ; Ben Hu ; Wei Zhang ; Bei Li ; Yan Zhu ; Guangjian Zhu ; Xurui Shen [République populaire de Chine] ; Cheng Peng ; Zhengli Shi

Source :

Viruses [ 1999-4915 ] ; 2019.

RBID : PMC:6521148

Descripteurs français

KwdFr :
- Analyse de séquence d'ADN, Animaux, Cadres ouverts de lecture (génétique), Chine, Chiroptera (virologie), Génome viral, Infections à coronavirus (médecine vétérinaire), Infections à coronavirus (virologie), Phylogénie, Protéines virales (génétique), Séquençage nucléotidique à haut débit, Variation génétique, Évolution moléculaire.
MESH :
- génétique : Cadres ouverts de lecture, Protéines virales.
- médecine vétérinaire : Infections à coronavirus.
- virologie : Chiroptera, Infections à coronavirus.
- Analyse de séquence d'ADN, Animaux, Chine, Génome viral, Phylogénie, Séquençage nucléotidique à haut débit, Variation génétique, Évolution moléculaire.
Wicri :
- geographic : République populaire de Chine.

English descriptors

KwdEn :
- Alphacoronavirus (classification), Alphacoronavirus (isolation & purification), Animals, China, Chiroptera (virology), Coronavirus Infections (veterinary), Coronavirus Infections (virology), Evolution, Molecular, Genetic Variation, Genome, Viral, High-Throughput Nucleotide Sequencing, Open Reading Frames (genetics), Phylogeny, Sequence Analysis, DNA, Viral Proteins (genetics).
MESH :
- chemical , genetics : Viral Proteins.
- geographic : China.
- classification : Alphacoronavirus.
- genetics : Open Reading Frames.
- isolation & purification : Alphacoronavirus.
- veterinary : Coronavirus Infections.
- virology : Chiroptera, Coronavirus Infections.
- Animals, Evolution, Molecular, Genetic Variation, Genome, Viral, High-Throughput Nucleotide Sequencing, Phylogeny, Sequence Analysis, DNA.

Abstract

Bats have been identified as a natural reservoir of a variety of coronaviruses (CoVs). Several of them have caused diseases in humans and domestic animals by interspecies transmission. Considering the diversity of bat coronaviruses, bat species and populations, we expect to discover more bat CoVs through virus surveillance. In this study, we described a new member of alphaCoV (BtCoV/Rh/YN2012) in bats with unique genome features. Unique accessory genes, ORF4a and ORF4b were found between the spike gene and the envelope gene, while ORF8 gene was found downstream of the nucleocapsid gene. All the putative genes were further confirmed by reverse-transcription analyses. One unique gene at the 3’ end of the BtCoV/Rh/YN2012 genome, ORF9, exhibits ~30% amino acid identity to ORF7a of the SARS-related coronavirus. Functional analysis showed ORF4a protein can activate IFN-β production, whereas ORF3a can regulate NF-κB production. We also screened the spike-mediated virus entry using the spike-pseudotyped retroviruses system, although failed to find any fully permissive cells. Our results expand the knowledge on the genetic diversity of bat coronaviruses. Continuous screening of bat viruses will help us further understand the important role played by bats in coronavirus evolution and transmission.

Url:

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6521148

DOI: 10.3390/v11040379
PubMed: 31022925
PubMed Central: 6521148

Affiliations:

Le document en format XML

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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Characterization of a New Member of Alphacoronavirus with Unique Genomic Features in Rhinolophus Bats</title>
<author><name sortKey="Wang, Ning" sort="Wang, Ning" uniqKey="Wang N" first="Ning" last="Wang">Ning Wang</name>
<affiliation><nlm:aff id="af1-viruses-11-00379">CAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan 430071, China;<email>wuzhongxiaoliu@163.com</email>
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<author><name sortKey="Luo, Chuming" sort="Luo, Chuming" uniqKey="Luo C" first="Chuming" last="Luo">Chuming Luo</name>
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<author><name sortKey="Liu, Haizhou" sort="Liu, Haizhou" uniqKey="Liu H" first="Haizhou" last="Liu">Haizhou Liu</name>
<affiliation><nlm:aff id="af3-viruses-11-00379">Center for Emerging Infectious Disease, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan 430071, China;<email>liuhz@wh.iov.cn</email>
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</author>
<author><name sortKey="Yang, Xinglou" sort="Yang, Xinglou" uniqKey="Yang X" first="Xinglou" last="Yang">Xinglou Yang</name>
<affiliation><nlm:aff id="af1-viruses-11-00379">CAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan 430071, China;<email>wuzhongxiaoliu@163.com</email>
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 (C.P.)</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Hu, Ben" sort="Hu, Ben" uniqKey="Hu B" first="Ben" last="Hu">Ben Hu</name>
<affiliation><nlm:aff id="af1-viruses-11-00379">CAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan 430071, China;<email>wuzhongxiaoliu@163.com</email>
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 (C.P.)</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Zhang, Wei" sort="Zhang, Wei" uniqKey="Zhang W" first="Wei" last="Zhang">Wei Zhang</name>
<affiliation><nlm:aff id="af1-viruses-11-00379">CAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan 430071, China;<email>wuzhongxiaoliu@163.com</email>
 (N.W.);<email>chine.lcm@163.com</email>
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 (X.S.);<email>pengcheng@wh.iov.cn</email>
 (C.P.)</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Li, Bei" sort="Li, Bei" uniqKey="Li B" first="Bei" last="Li">Bei Li</name>
<affiliation><nlm:aff id="af1-viruses-11-00379">CAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan 430071, China;<email>wuzhongxiaoliu@163.com</email>
 (N.W.);<email>chine.lcm@163.com</email>
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 (X.Y.);<email>ouihaagendazs@hotmail.com</email>
 (B.H.);<email>happyzhang_2007@163.com</email>
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 (X.S.);<email>pengcheng@wh.iov.cn</email>
 (C.P.)</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Zhu, Yan" sort="Zhu, Yan" uniqKey="Zhu Y" first="Yan" last="Zhu">Yan Zhu</name>
<affiliation><nlm:aff id="af1-viruses-11-00379">CAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan 430071, China;<email>wuzhongxiaoliu@163.com</email>
 (N.W.);<email>chine.lcm@163.com</email>
 (C.L.);<email>yangxl@wh.iov.cn</email>
 (X.Y.);<email>ouihaagendazs@hotmail.com</email>
 (B.H.);<email>happyzhang_2007@163.com</email>
 (W.Z.);<email>shenqi0622@126.com</email>
 (B.L.);<email>zhuyan@wh.iov.cn</email>
 (Y.Z.);<email>pukulovesu@163.com</email>
 (X.S.);<email>pengcheng@wh.iov.cn</email>
 (C.P.)</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Zhu, Guangjian" sort="Zhu, Guangjian" uniqKey="Zhu G" first="Guangjian" last="Zhu">Guangjian Zhu</name>
<affiliation><nlm:aff id="af4-viruses-11-00379">EcoHealth Alliance, New York, NY 10001, USA;<email>zhugj609@126.com</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Shen, Xurui" sort="Shen, Xurui" uniqKey="Shen X" first="Xurui" last="Shen">Xurui Shen</name>
<affiliation><nlm:aff id="af1-viruses-11-00379">CAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan 430071, China;<email>wuzhongxiaoliu@163.com</email>
 (N.W.);<email>chine.lcm@163.com</email>
 (C.L.);<email>yangxl@wh.iov.cn</email>
 (X.Y.);<email>ouihaagendazs@hotmail.com</email>
 (B.H.);<email>happyzhang_2007@163.com</email>
 (W.Z.);<email>shenqi0622@126.com</email>
 (B.L.);<email>zhuyan@wh.iov.cn</email>
 (Y.Z.);<email>pukulovesu@163.com</email>
 (X.S.);<email>pengcheng@wh.iov.cn</email>
 (C.P.)</nlm:aff>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="af2-viruses-11-00379">College of Life Science, University of Chinese Academy of Sciences, Beijing 100864, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>College of Life Science, University of Chinese Academy of Sciences, Beijing 100864</wicri:regionArea>
<placeName><settlement type="city">Pékin</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Peng, Cheng" sort="Peng, Cheng" uniqKey="Peng C" first="Cheng" last="Peng">Cheng Peng</name>
<affiliation><nlm:aff id="af1-viruses-11-00379">CAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan 430071, China;<email>wuzhongxiaoliu@163.com</email>
 (N.W.);<email>chine.lcm@163.com</email>
 (C.L.);<email>yangxl@wh.iov.cn</email>
 (X.Y.);<email>ouihaagendazs@hotmail.com</email>
 (B.H.);<email>happyzhang_2007@163.com</email>
 (W.Z.);<email>shenqi0622@126.com</email>
 (B.L.);<email>zhuyan@wh.iov.cn</email>
 (Y.Z.);<email>pukulovesu@163.com</email>
 (X.S.);<email>pengcheng@wh.iov.cn</email>
 (C.P.)</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Shi, Zhengli" sort="Shi, Zhengli" uniqKey="Shi Z" first="Zhengli" last="Shi">Zhengli Shi</name>
<affiliation><nlm:aff id="af1-viruses-11-00379">CAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan 430071, China;<email>wuzhongxiaoliu@163.com</email>
 (N.W.);<email>chine.lcm@163.com</email>
 (C.L.);<email>yangxl@wh.iov.cn</email>
 (X.Y.);<email>ouihaagendazs@hotmail.com</email>
 (B.H.);<email>happyzhang_2007@163.com</email>
 (W.Z.);<email>shenqi0622@126.com</email>
 (B.L.);<email>zhuyan@wh.iov.cn</email>
 (Y.Z.);<email>pukulovesu@163.com</email>
 (X.S.);<email>pengcheng@wh.iov.cn</email>
 (C.P.)</nlm:aff>
</affiliation>
</author>
</analytic>
<series><title level="j">Viruses</title>
<idno type="eISSN">1999-4915</idno>
<imprint><date when="2019">2019</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Alphacoronavirus (classification)</term>
<term>Alphacoronavirus (isolation & purification)</term>
<term>Animals</term>
<term>China</term>
<term>Chiroptera (virology)</term>
<term>Coronavirus Infections (veterinary)</term>
<term>Coronavirus Infections (virology)</term>
<term>Evolution, Molecular</term>
<term>Genetic Variation</term>
<term>Genome, Viral</term>
<term>High-Throughput Nucleotide Sequencing</term>
<term>Open Reading Frames (genetics)</term>
<term>Phylogeny</term>
<term>Sequence Analysis, DNA</term>
<term>Viral Proteins (genetics)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de séquence d'ADN</term>
<term>Animaux</term>
<term>Cadres ouverts de lecture (génétique)</term>
<term>Chine</term>
<term>Chiroptera (virologie)</term>
<term>Génome viral</term>
<term>Infections à coronavirus (médecine vétérinaire)</term>
<term>Infections à coronavirus (virologie)</term>
<term>Phylogénie</term>
<term>Protéines virales (génétique)</term>
<term>Séquençage nucléotidique à haut débit</term>
<term>Variation génétique</term>
<term>Évolution moléculaire</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Viral Proteins</term>
</keywords>
<keywords scheme="MESH" type="geographic" xml:lang="en"><term>China</term>
</keywords>
<keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Alphacoronavirus</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Open Reading Frames</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Cadres ouverts de lecture</term>
<term>Protéines virales</term>
</keywords>
<keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Alphacoronavirus</term>
</keywords>
<keywords scheme="MESH" qualifier="médecine vétérinaire" xml:lang="fr"><term>Infections à coronavirus</term>
</keywords>
<keywords scheme="MESH" qualifier="veterinary" xml:lang="en"><term>Coronavirus Infections</term>
</keywords>
<keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Chiroptera</term>
<term>Infections à coronavirus</term>
</keywords>
<keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Chiroptera</term>
<term>Coronavirus Infections</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Animals</term>
<term>Evolution, Molecular</term>
<term>Genetic Variation</term>
<term>Genome, Viral</term>
<term>High-Throughput Nucleotide Sequencing</term>
<term>Phylogeny</term>
<term>Sequence Analysis, DNA</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term>
<term>Animaux</term>
<term>Chine</term>
<term>Génome viral</term>
<term>Phylogénie</term>
<term>Séquençage nucléotidique à haut débit</term>
<term>Variation génétique</term>
<term>Évolution moléculaire</term>
</keywords>
<keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>République populaire de Chine</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en"><p>Bats have been identified as a natural reservoir of a variety of coronaviruses (CoVs). Several of them have caused diseases in humans and domestic animals by interspecies transmission. Considering the diversity of bat coronaviruses, bat species and populations, we expect to discover more bat CoVs through virus surveillance. In this study, we described a new member of alphaCoV (BtCoV/Rh/YN2012) in bats with unique genome features. Unique accessory genes, <italic>ORF4a</italic>
 and <italic>ORF4b</italic>
 were found between the spike gene and the envelope gene, while <italic>ORF8</italic>
 gene was found downstream of the nucleocapsid gene. All the putative genes were further confirmed by reverse-transcription analyses. One unique gene at the 3’ end of the BtCoV/Rh/YN2012 genome, <italic>ORF9</italic>
, exhibits ~30% amino acid identity to <italic>ORF7a</italic>
 of the SARS-related coronavirus. Functional analysis showed ORF4a protein can activate IFN-β production, whereas ORF3a can regulate NF-κB production. We also screened the spike-mediated virus entry using the spike-pseudotyped retroviruses system, although failed to find any fully permissive cells. Our results expand the knowledge on the genetic diversity of bat coronaviruses. Continuous screening of bat viruses will help us further understand the important role played by bats in coronavirus evolution and transmission.</p>
</div>
</front>
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<author><name sortKey="Chow, V T K" uniqKey="Chow V">V.T.K. Chow</name>
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<author><name sortKey="Mukherjee, S K" uniqKey="Mukherjee S">S.K. Mukherjee</name>
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<author><name sortKey="Lal, S K" uniqKey="Lal S">S.K. Lal</name>
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<author><name sortKey="Martinez Sobrido, L" uniqKey="Martinez Sobrido L">L. Martinez-Sobrido</name>
</author>
<author><name sortKey="Palese, P" uniqKey="Palese P">P. Palese</name>
</author>
</analytic>
</biblStruct>
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<author><name sortKey="Wu, J" uniqKey="Wu J">J. Wu</name>
</author>
<author><name sortKey="Shan, Y J" uniqKey="Shan Y">Y.J. Shan</name>
</author>
<author><name sortKey="Yao, Z Y" uniqKey="Yao Z">Z.Y. Yao</name>
</author>
<author><name sortKey="Dong, B" uniqKey="Dong B">B. Dong</name>
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<author><name sortKey="Chen, B" uniqKey="Chen B">B. Chen</name>
</author>
<author><name sortKey="Zhao, Z H" uniqKey="Zhao Z">Z.H. Zhao</name>
</author>
<author><name sortKey="Wang, S Q" uniqKey="Wang S">S.Q. Wang</name>
</author>
<author><name sortKey="Chen, J P" uniqKey="Chen J">J.P. Chen</name>
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<author><name sortKey="Cong, Y W" uniqKey="Cong Y">Y.W. Cong</name>
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</author>
<author><name sortKey="Goh, P Y" uniqKey="Goh P">P.Y. Goh</name>
</author>
<author><name sortKey="Shen, S" uniqKey="Shen S">S. Shen</name>
</author>
<author><name sortKey="Tan, T H P" uniqKey="Tan T">T.H.P. Tan</name>
</author>
<author><name sortKey="Lim, S G" uniqKey="Lim S">S.G. Lim</name>
</author>
<author><name sortKey="Hong, W J" uniqKey="Hong W">W.J. Hong</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Tan, Y X" uniqKey="Tan Y">Y.X. Tan</name>
</author>
<author><name sortKey="Tan, T H P" uniqKey="Tan T">T.H.P. Tan</name>
</author>
<author><name sortKey="Lee, M J R" uniqKey="Lee M">M.J.R. Lee</name>
</author>
<author><name sortKey="Tham, P Y" uniqKey="Tham P">P.Y. Tham</name>
</author>
<author><name sortKey="Gunalan, V" uniqKey="Gunalan V">V. Gunalan</name>
</author>
<author><name sortKey="Druce, J" uniqKey="Druce J">J. Druce</name>
</author>
<author><name sortKey="Birch, C" uniqKey="Birch C">C. Birch</name>
</author>
<author><name sortKey="Catton, M" uniqKey="Catton M">M. Catton</name>
</author>
<author><name sortKey="Fu, N Y" uniqKey="Fu N">N.Y. Fu</name>
</author>
<author><name sortKey="Yu, V C" uniqKey="Yu V">V.C. Yu</name>
</author>
</analytic>
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<name sortKey="Li, Bei" sort="Li, Bei" uniqKey="Li B" first="Bei" last="Li">Bei Li</name>
<name sortKey="Liu, Haizhou" sort="Liu, Haizhou" uniqKey="Liu H" first="Haizhou" last="Liu">Haizhou Liu</name>
<name sortKey="Peng, Cheng" sort="Peng, Cheng" uniqKey="Peng C" first="Cheng" last="Peng">Cheng Peng</name>
<name sortKey="Shi, Zhengli" sort="Shi, Zhengli" uniqKey="Shi Z" first="Zhengli" last="Shi">Zhengli Shi</name>
<name sortKey="Yang, Xinglou" sort="Yang, Xinglou" uniqKey="Yang X" first="Xinglou" last="Yang">Xinglou Yang</name>
<name sortKey="Zhang, Wei" sort="Zhang, Wei" uniqKey="Zhang W" first="Wei" last="Zhang">Wei Zhang</name>
<name sortKey="Zhu, Guangjian" sort="Zhu, Guangjian" uniqKey="Zhu G" first="Guangjian" last="Zhu">Guangjian Zhu</name>
<name sortKey="Zhu, Yan" sort="Zhu, Yan" uniqKey="Zhu Y" first="Yan" last="Zhu">Yan Zhu</name>
</noCountry>
<country name="République populaire de Chine"><noRegion><name sortKey="Wang, Ning" sort="Wang, Ning" uniqKey="Wang N" first="Ning" last="Wang">Ning Wang</name>
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<name sortKey="Luo, Chuming" sort="Luo, Chuming" uniqKey="Luo C" first="Chuming" last="Luo">Chuming Luo</name>
<name sortKey="Shen, Xurui" sort="Shen, Xurui" uniqKey="Shen X" first="Xurui" last="Shen">Xurui Shen</name>
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</affiliations>
</record>

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   |wiki=    Sante
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   |texte=   Characterization of a New Member of Alphacoronavirus with Unique Genomic Features in Rhinolophus Bats
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Characterization of a New Member of Alphacoronavirus with Unique Genomic Features in Rhinolophus Bats

Characterization of a New Member of Alphacoronavirus with Unique Genomic Features in Rhinolophus Bats

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